Explore projects

Container Docker application that facilitate the solida usage, via a friendly GUI

MUSTA: a modular pipeline to detect, classify and interpret mutations in cancer

Estimation of tumor fraction in cell-free DNA (cfDNA).

Training Course on Galaxy for Bioinformatics tool developers

DNA Reference Creator: this pipeline is aimed at downloading and building indexes and accessory files for reference genomes

A novel affordable and reliable framework for accurate detection and comprehensive analysis of somatic mutations in cancer

a pipeline for RNA-seq data analysis.

Snakemake enabled pipeline for smallRNA-Seq identification

Subset of publicly available genomic data from the Genome Sequence Archive of the Beijing Institute of Genomics, accessible with the accession ID PRJCA000091.

mapping and variant calling following GATK Best Practices for Germline Variant Discovery.

A complete Laboratory Information Management System for Next Generation Sequencing Laboratories

SOLIDA is command-line solution that facilitate the reproducibility and portability of NGS pipelines. It can easily organize the deployment, the data management and the execution of a Snakemake based workflow.

MUSTA: a modular pipeline to detect, classify and interpret mutations in cancer

A repository with test data for DNA analysis pipelines

Standalone RNA-seq differential expression module for processing transcript quantifications using tximport and DESeq2.

Reliable foundation library to access infrastructure elements for next generation sequencing data analysis and management

Snakemake enabled pipeline for coverage estimation with GATK DepthOfCoverage