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Genomic Hotspot Analysis Pipeline

UMI-Based Preprocessing Pipeline

Beacon v2.x

Reproducible Snakemake pipeline for RNA-seq preprocessing, transcript quantification, and quality assessment.

a bunch of useful functions and classes

solida-core documentation:

Non Invasive Analysis of Somatic Mutations in Cancer

pipeline for Next-Generation Sequencing Whole Genome data analysis.

Demonstrative source code automatically packaging provenance information for an output of a glucose-insulin simulation model

Snakemake pipeline to map DNA datasets to a given reference genome using BWA MEM and Samtools.