Explore projects

a pipeline for RNA-seq data analysis.

Snakemake enabled pipeline for smallRNA-Seq identification

Subset of publicly available genomic data from the Genome Sequence Archive of the Beijing Institute of Genomics, accessible with the accession ID PRJCA000091.

mapping and variant calling following GATK Best Practices for Germline Variant Discovery.

A complete Laboratory Information Management System for Next Generation Sequencing Laboratories

SOLIDA is command-line solution that facilitate the reproducibility and portability of NGS pipelines. It can easily organize the deployment, the data management and the execution of a Snakemake based workflow.

MUSTA: a modular pipeline to detect, classify and interpret mutations in cancer

A repository with test data for DNA analysis pipelines

Standalone RNA-seq differential expression module for processing transcript quantifications using tximport and DESeq2.

Reliable foundation library to access infrastructure elements for next generation sequencing data analysis and management

Snakemake enabled pipeline for coverage estimation with GATK DepthOfCoverage

MUSTA: end-to-end pipeline to detect, classify and interpret mutations in cancer

Docker image of PBEST, used to screen COVID-19 samples via group testing, as described in the manuscript "Efficient high throughput SARS-CoV-2 testing to detect asymptomatic carriers", by Shental et al.